If TMWap/Mr. Sunshine didn't go along with the reset, why bother going to the North, getting the thumbs, and going to DC, he could just destroy the machine or the drone so no one can use it.
edit: Not sure if already posted, what I think is Mr Sunshine's canisters were the real "reset", Roberta was a back-up if he screwed up, Dr. Teller just went with the Founder's plan (to not get killed) but Roberta's canisters were not "reset" canisters (Teller did something that we do not know yet?), so only one of each set was in the drone and we will find out next season what will be the consequence to humans and Z's.